A friend of mine works with a 'remote' drummer who is a NYC session and Broadway guy. He sends 14 mics. I believe this is mainly so that he does not have to set up a 'custom' miking for each client. He assumes the client does not feel 'obligated' to use
all the mics, but he does take care in positioning.
For example, he has a 57 and a 414 on snare top. I think he figures that his clients are smart enough to not feel
compelled to use both, but will decide which
one is the sound they want.
When mixing these drums, I might (for example) use
either the stereo overheads (condensers) or the mono overhead (ribbon) which he also provides. But they are positioned in such a way that they are equidistant to the snare, so if I really wanted use 3 overheads, I would be able to do so. IMO there nothing wrong with a 'remote' drummer sending you a lot of mics, if their goal is to cover the bases.
If you are recording your own drums, you can set up only the mics you know you are going to use.
As for the OP's issue, I find
SoundRadix Auto-Align 2 to be a great tool if the mics are not lining up. I have an IBP hardware unit and the plugin, but AA is way faster.